Recent Publications

Ding Y, Vanselow DJ, Yakovlev MA, Katz SR, Lin AY, Clark DP, Vargas P, Xin X, Copper JE, Canfield VA, Ang KC, Wang Y, Xiao X, De Carlo F, van Rossum DB, La Riviere P, Cheng KC. Computational 3D Histological Phenotyping of Whole Zebrafish by X-ray Histotomography. Elife. 2019 May 7;8. pii: e44898. doi: 10.7554/eLife.44898 PMID: 31063133.

Perspective Article for Ding et al. 3D Imaging: Taking a closer look at whole organisms by Noriko Ichino and Stephen C Ekker.


Lin AY, Ding Y, Vanselow DJ, Katz SR, Yakovlev MA, Clark D, Mandrell D, Copper JE, van Rossum DB, Cheng KC. Rigid Embedding of Fixed and Stained Whole Millimeter-Scale Specimens for Section-free Imaging by Micro-CT. J Vis Exp. 2018 Oct 17;(140). doi: 10.3791/58293. PMID: 30394379 PMCID: PMC6235553.


Copper JE, Budgeon LR, Foutz CA, van Rossum DB, Vanselow DJ, Hubley MJ, Clark DP, Mandrell DT, Cheng KC. Comparative analysis of fixation and embedding techniques for optimized histological preparation of zebrafish. Comp Biochem Physiol C Toxicol Pharmacol. 2017 Nov 20. pii: S1532-0456(17)30208-9. doi:10.1016/j.cbpc.2017.11.003. PubMed PMID: 29157956, PMCID: PMC5936644.

Web-Based Companion site for Copper et al.


Xin X, Clark D, Ang KC, van Rossum DB, Copper J, Xiao X, La Riviere P, Cheng KC. Synchrotron micro-CT Imaging of Soft Tissue in Juvenile Zebrafish Reveals Retinotectal Projections. Proc of SPIE, 2017. Optical Biopsy XV: Towards Real-Time Spectroscopic Imaging and Diagnosis, edited by Robert R. Alfano, Stavros G. Demos, Proc. Of SPIE Vol. 10060, 100601I. doi: 10.1117/12.2267477


Cheng KC, Katz SR, Lin AY, Xin X, Ding Y. Whole-Organism Cellular Pathology: A Systems Approach to Phenomics. Adv Genet. 2016; 95: 89-115. doi: 10.1016/bs.adgen.2016.05.003. Epub 2016 Jul 29. Review. PMID: 27503355 PMCID: In Progress...